Info • Yarrowia lipolytica PO1f v1.0

Status

[June 2019] The Yarrowia lipolytica PO1f v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Yarrowia lipolytica PO1f v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.21
Sequencing read coverage depth 155.42x
# of contigs 175
# of scaffolds 168
# of scaffolds >= 2Kbp 156
Scaffold N50 30
Scaffold L50 (Mbp) 0.21
# of gaps 7
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.78, 0.52, 0.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16328 15788 96.7%
Ests est.fasta 151880071 151325393 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1667 1431
transcript 1589 1377
exon 1226 1078
intron 265 157
description:
protein length (aa) 458 385
exons per gene 1.30 1
# of gene models 6798


Collaborators

Cong Trinh, University of Tennessee, Knoxville

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.