Info • Yarrowia lipolytica CLIB89(W29)

Status

The genome sequence and gene prediction of Yarrowia lipolytica strain W29/CLIB89 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on March 19, 2019. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Yarrowia lipolytica CLIB89(W29) release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.50
Sequencing read coverage depth >2000x
# of contigs 6
# of scaffolds 6
# of scaffolds >= 2Kbp 6
Scaffold N50 3
Scaffold L50 (Mbp) 3.63
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.20, 4.00, 3.63


Gene Models ExternalModels
length (bp) of: average median
gene 1328 1077
transcript 1272 1029
exon 976 689
intron 185 63
description:
protein length (aa) 424 343
exons per gene 1.30 1
# of gene models 7919


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Magnan C, Yu J, Chang I, Jahn E, Kanomata Y, Wu J, Zeller M, Oakes M, Baldi P, Sandmeyer S
Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity.
PLoS One. 2016;11(9):e0162363. doi: 10.1371/journal.pone.0162363

Funding

This project was not sequenced at the JGI.