Info • Yarrowia lipolytica NRRL Y-64008 v1.0

Status

[September 2021] The Yarrowia lipolytica NRRL Y-64008 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.50
Sequencing read coverage depth 149.31x
# of contigs 6
# of scaffolds 6
# of scaffolds >= 2Kbp 6
Scaffold N50 3
Scaffold L50 (Mbp) 3.64
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.20, 4.02, 3.64


Gene Models FilteredModels2
length (bp) of: average median
gene 1498 1239
transcript 1432 1194
exon 1143 960
intron 265 162
description:
protein length (aa) 477 398
exons per gene 1.25 1
# of gene models 6577


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Jagtap SS, Liu J-J, Walukiewicz HE, Riley R, Ahrendt S, Koriabine M, Cobaugh K, Salamov A, Yoshinaga Y, Ng V, Daum C, Grigoriev IV, Slininger PJ, Dien BS, Jin Y-S, Rao CV
Draft genome sequence of Yarrowia lipolytica NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiol Resour Announc. 2023 Nov 20;():e0043523. doi: 10.1128/MRA.00435-23

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.