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Info • Yarrowia lipolytica FKP355 v1.0


[October 2016] The Yarrowia lipolytica FKP355 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Yarrowia lipolytica v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.08
Sequencing read coverage depth 279.01x
# of contigs 38
# of scaffolds 38
# of scaffolds >= 2Kbp 36
Scaffold N50 6
Scaffold L50 (Mbp) 1.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.44, 1.95, 1.78

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 16328 15538 95.2%
Ests est.fasta 151880071 148876967 98.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 1609 1377
transcript 1527 1314
exon 1173 1001
intron 272 174
protein length (aa) 445 373
exons per gene 1.30 1
# of gene models 6858


Scott Baker at the Pacific Northwest National Laboratory

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.