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Info • Yarrowia lipolytica PO1f v2.0


[February 2021] The Yarrowia lipolytica PO1f genome was not sequenced by the JGI. The assembly was provided by Eric Young and it was annotated using the JGI Fungal Annotation Pipeline. The transcriptome was sequenced with Illumina at the JGI and assembled using Trinity.

Summary statistics for the Yarrowia lipolytica PO1f v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.53
Sequencing read coverage depth
# of contigs 10
# of scaffolds 10
# of scaffolds >= 2Kbp 10
Scaffold N50 3
Scaffold L50 (Mbp) 3.64
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.20, 4.00, 3.64

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 373358895 370168032 99.1%
Other Trinity_assembled_Illumina_transcriptome 22024 17157 77.9%

Gene Models FilteredModels2
length (bp) of: average median
gene 1710 1483
transcript 1630 1425
exon 1245 1104
intron 260 148
protein length (aa) 458 384
exons per gene 1.31 1
# of gene models 6814


  • Eric Young, Worchester Polytechnic Institute, Worchester, MA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.