Info • Zychaea mexicana RSA 1403 v1.0

Status

[July 2016] The Zychaea mexicana RSA 1403 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline.

Summary statistics for the Zychaea mexicana v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.64
Sequencing read coverage depth 260x
# of contigs 357
# of scaffolds 357
# of scaffolds >= 2Kbp 352
Scaffold N50 49
Scaffold L50 (Mbp) 0.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.08, 1.02, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 60399 55440 91.8%
Ests est.fasta 157685287 153619413 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1694 1426
transcript 1321 1083
exon 291 176
intron 108 91
description:
protein length (aa) 377 298
exons per gene 4.54 4
# of gene models 14004


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California



Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience. 2022 Aug 19;25(8):104840. doi: 10.1016/j.isci.2022.104840

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.