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Info • Zygoascus hellenicus Y-7136 v1.0

Status

(Sep 2015) The Zygoascus hellenicus Y-7136 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010).

Summary statistics for the Zygoascus hellenicus Y-7136 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 12.17
Sequencing read coverage depth 98.4x
# of contigs 48
# of scaffolds 11
# of scaffolds >= 2Kbp 8
Scaffold N50 2
Scaffold L50 (Mbp) 3.55
# of gaps 37
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 3.77, 3.55, 2.17


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters CombestEstClusters 16726 16726 100.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1522 1317
transcript 1464 1266
exon 1001 826
intron 128 75
description:
protein length (aa) 454 382
exons per gene 1.46 1
# of gene models 5430


Collaborators

Joey Spatafora, Oregon State University

Jon Magnuson, Pacific Northwest National Laboratory

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.