Status
[August 2021] The Zygosaccharomyces rouxii NRRL Y-64007 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 9.95 |
| Sequencing read coverage depth | 181.58x |
| # of contigs | 8 |
| # of scaffolds | 8 |
| # of scaffolds >= 2Kbp | 8 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 1.53 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.90, 1.71, 1.53 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 7216 | 5067 | 70.2% |
| Ests | est.fasta | 168526386 | 167029939 | 99.1% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1740 | 1484 |
| transcript | 1732 | 1479 |
| exon | 1607 | 1389 |
| intron | 108 | 73 |
| description: | ||
| protein length (aa) | 499 | 409 |
| exons per gene | 1.08 | 1 |
| # of gene models | 5001 |
Collaborators
- Christopher V. Rao, University of Illinois Urbana-Champaign, IL, USA
- Sujit Jagtap, University of Illinois Urbana-Champaign, IL, USA
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Jagtap SS, Liu JJ, Walukiewicz HE, Pangilinan J, Lipzen A, Ahrendt S, Koriabine M, Cobaugh K, Salamov A, Yoshinaga Y, Ng V, Daum C, Grigoriev IV, Slininger PJ, Dien BS, Jin YS, Rao CV
Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates.
Microbiol Resour Announc. 2022 Apr 20;():e0005022. doi: 10.1128/mra.00050-22
Jagtap SS, Liu JJ, Walukiewicz HE, Pangilinan J, Lipzen A, Ahrendt S, Koriabine M, Cobaugh K, Salamov A, Yoshinaga Y, Ng V, Daum C, Grigoriev IV, Slininger PJ, Dien BS, Jin YS, Rao CV
Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates.
Microbiol Resour Announc. 2022 Apr 20;():e0005022. doi: 10.1128/mra.00050-22
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
