Info • Zymoseptoria pseudotritici STIR04_2.2.1

Status

The genome of Zymoseptoria pseudotritici was not sequenced at the JGI. This genome was obtained from Eva Holtgrewe Stukenbrock at the Christian-Albrechts University of Kiel and Max Planck Institute for Evolutionary Biology. This copy of the genome is not maintained by the authour and is therefore not automatically updated.

Summary statistics for the Zymoseptoria pseudotritici v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.66
Sequencing read coverage depth 1x
# of contigs 5248
# of scaffolds 1164
# of scaffolds >= 2Kbp 817
Scaffold N50 107
Scaffold L50 (Mbp) 0.09
# of gaps 4084
% of scaffold length in gaps 3.2%
Three largest Scaffolds (Mbp) 0.31, 0.31, 0.29


Gene Models ExternalModels
length (bp) of: average median
gene 1595 1302
transcript 1464 1206
exon 606 315
intron 95 60
description:
protein length (aa) 488 402
exons per gene 2.42 2
# of gene models 11044


Collaborators

Eva H. Stukenbrock at the Christian-Albrechts University of Kiel and Max Planck Institute for Evolutionary Biology.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Stukenbrock EH, Christiansen FB, Hansen TT, Dutheil JY, Schierup MH
Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species.
Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10954-9. doi: 10.1073/pnas.1201403109

Stukenbrock EH, Bataillon T, Dutheil JY, Hansen TT, Li R, Zala M, McDonald BA, Wang J, Schierup MH
The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species.
Genome Res. 2011 Dec;21(12):2157-66. doi: 10.1101/gr.118851.110

Funding

This project was not sequenced at the JGI.