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Info • Absidia repens NRRL 1336 v1.0

Status

[Feb 2016] The Absidia repens NRRL​ 1336 genome was sequenced using the PacBio platform and assembled together with Falcon version 0.3.0 (https://github.com/PacificBiosciences/FALCON). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Absidia repens NRRL​ 1336 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.42
Sequencing read coverage depth 52.92x
# of contigs 94
# of scaffolds 94
# of scaffolds >= 2Kbp 88
Scaffold N50 11
Scaffold L50 (Mbp) 1.30
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.90, 2.51, 2.34


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35484 33681 94.9%
Ests est.fasta 159653626 157653236 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1795 1522
transcript 1454 1208
exon 308 183
intron 94 83
description:
protein length (aa) 420 339
exons per gene 4.72 4
# of gene models 14919


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.