Status
The genome sequence and gene prediction of Chaetomium thermophilum var thermophilum DSM 1495 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on October 31, 2018. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Chaetomium thermophilum var
thermophilum DSM 1495 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 28.32 |
Sequencing read coverage depth | |
# of contigs | 52 |
# of scaffolds | 21 |
# of scaffolds >= 2Kbp | 17 |
Scaffold N50 | 4 |
Scaffold L50 (Mbp) | 2.85 |
# of gaps | 31 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 6.91, 3.46, 3.12 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1854 | 1523 |
transcript | 1637 | 1344 |
exon | 558 | 277 |
intron | 114 | 69 |
description: | ||
protein length (aa) | 546 | 448 |
exons per gene | 2.93 | 3 |
# of gene models | 7066 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Amlacher S, Sarges P, Flemming D, van Noort V, Kunze R, Devos DP, Arumugam M, Bork P, Hurt E
Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile.
Cell. 2011 Jul 22;146(2):277-89. doi: 10.1016/j.cell.2011.06.039
Bock T, Chen WH, Ori A, Malik N, Silva-Martin N, Huerta-Cepas J, Powell ST, Kastritis PL, Smyshlyaev G, Vonkova I, Kirkpatrick J, Doerks T, Nesme L, Baßler J, Kos M, Hurt E, Carlomagno T, Gavin AC, Barabas O, Müller CW, van Noort V, Beck M, Bork P
An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum.
Nucleic Acids Res. 2014 Dec 16;42(22):13525-33. doi: 10.1093/nar/gku1147
Amlacher S, Sarges P, Flemming D, van Noort V, Kunze R, Devos DP, Arumugam M, Bork P, Hurt E
Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile.
Cell. 2011 Jul 22;146(2):277-89. doi: 10.1016/j.cell.2011.06.039
Bock T, Chen WH, Ori A, Malik N, Silva-Martin N, Huerta-Cepas J, Powell ST, Kastritis PL, Smyshlyaev G, Vonkova I, Kirkpatrick J, Doerks T, Nesme L, Baßler J, Kos M, Hurt E, Carlomagno T, Gavin AC, Barabas O, Müller CW, van Noort V, Beck M, Bork P
An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum.
Nucleic Acids Res. 2014 Dec 16;42(22):13525-33. doi: 10.1093/nar/gku1147
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Sordariomycetidae Sordariales
Funding
This project was not sequenced at the JGI.