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Info • Fusarium oxysporum v1.0
Please note that this organism is for archival use only. Please see the current Fusarium oxysporum f. sp. lycopersici 4287 v2 site for the latest data and information.

Status

The genome of Fusarium oxysporum f. sp. lycopersici strain 4287 (race 2, VCG 0030) was sequenced by the BROAD Institute. In order to allow comparative analyses with other fungi, a copy of the genome of F. oxysporum is incorporated into MycoCosm. It was downloaded from the website of the BROAD Institute on May 20th, 2011.

Summary statistics for the Fusarium oxysporum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 61.36
Sequencing read coverage depth unknown
# of contigs 1362
# of scaffolds 114
# of scaffolds >= 2Kbp 112
Scaffold N50 11
Scaffold L50 (Mbp) 1.98
# of gaps 1248
% of scaffold length in gaps 2.3%
Three largest Scaffolds (Mbp) 4.36, 4.03, 3.31


Gene Models ExternalModels
length (bp) of: average median
gene 1520 1293
transcript 1348 1125
exon 498 288
intron 103 60
description:
protein length (aa) 407 338
exons per gene 2.70 2
# of gene models 17708


Genome Reference(s)

Funding

This project was not sequenced at the JGI.