Status
The genome of Fusarium
oxysporum f. sp. lycopersici strain 4287 (race 2, VCG
0030) was sequenced by the BROAD Institute. In order to allow
comparative analyses with other fungi, a copy of the genome of
F. oxysporum is incorporated into MycoCosm. It was
downloaded from the website
of the BROAD Institute on May 20th, 2011.
Summary statistics for the Fusarium oxysporum v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 61.36 |
| Sequencing read coverage depth | unknown |
| # of contigs | 1362 |
| # of scaffolds | 114 |
| # of scaffolds >= 2Kbp | 112 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 1.98 |
| # of gaps | 1248 |
| % of scaffold length in gaps | 2.3% |
| Three largest Scaffolds (Mbp) | 4.36, 4.03, 3.31 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1520 | 1293 |
| transcript | 1348 | 1125 |
| exon | 498 | 288 |
| intron | 103 | 60 |
| description: | ||
| protein length (aa) | 407 | 338 |
| exons per gene | 2.70 | 2 |
| # of gene models | 17708 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, Xu JR, Antoniw J, Baker SE, Bluhm BH, Breakspear A, Brown DW, Butchko RA, Chapman S, Coulson R, Coutinho PM, Danchin EG, Diener A, Gale LR, Gardiner DM, Goff S, Hammond-Kosack KE, Hilburn K, Hua-Van A, Jonkers W, Kazan K, Kodira CD, Koehrsen M, Kumar L, Lee YH, Li L, Manners JM, Miranda-Saavedra D, Mukherjee M, Park G, Park J, Park SY, Proctor RH, Regev A, Ruiz-Roldan MC, Sain D, Sakthikumar S, Sykes S, Schwartz DC, Turgeon BG, Wapinski I, Yoder O, Young S, Zeng Q, Zhou S, Galagan J, Cuomo CA, Kistler HC, Rep M
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.
Nature. 2010 Mar 18;464(7287):367-73. doi: 10.1038/nature08850
Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, Di Pietro A, Dufresne M, Freitag M, Grabherr M, Henrissat B, Houterman PM, Kang S, Shim WB, Woloshuk C, Xie X, Xu JR, Antoniw J, Baker SE, Bluhm BH, Breakspear A, Brown DW, Butchko RA, Chapman S, Coulson R, Coutinho PM, Danchin EG, Diener A, Gale LR, Gardiner DM, Goff S, Hammond-Kosack KE, Hilburn K, Hua-Van A, Jonkers W, Kazan K, Kodira CD, Koehrsen M, Kumar L, Lee YH, Li L, Manners JM, Miranda-Saavedra D, Mukherjee M, Park G, Park J, Park SY, Proctor RH, Regev A, Ruiz-Roldan MC, Sain D, Sakthikumar S, Sykes S, Schwartz DC, Turgeon BG, Wapinski I, Yoder O, Young S, Zeng Q, Zhou S, Galagan J, Cuomo CA, Kistler HC, Rep M
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.
Nature. 2010 Mar 18;464(7287):367-73. doi: 10.1038/nature08850
Funding
This project was not sequenced at the JGI.
