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Info • Tulasnella inquilina UAMH 7632 v1.0

Status

[June 2020] The Tulasnella inquilina UAMH 7632 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

The genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertiore of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Summary statistics for the Tulasnella inquilina UAMH 7632 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 87.14
Sequencing read coverage depth 82.61x
# of contigs 455
# of scaffolds 455
# of scaffolds >= 2Kbp 455
Scaffold N50 47
Scaffold L50 (Mbp) 0.46
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.72, 2.06, 1.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 77769 72352 93.0%
Ests est.fasta 121264568 120168795 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1862 1611
transcript 1492 1284
exon 243 152
intron 74 66
description:
protein length (aa) 428 350
exons per gene 6.14 5
# of gene models 15519


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.