Info • Umbelopsis ramanniana AG # v1.0

Status

The Umbelopsis ramanniana AG # genome was sequenced using the Illumina platform, assembled with AllPathsLG, and annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Umbelopsis ramanniana AG # v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 23.08
Sequencing read coverage depth 112
# of contigs 239
# of scaffolds 198
# of scaffolds >= 2Kbp 159
Scaffold N50 26
Scaffold L50 (Mbp) 0.29
# of gaps 41
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.88, 0.78, 0.75


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters CombestEstClusters 46981 46786 99.6%
Other RNAseq_contigs 19675 17881 90.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1789 1532
transcript 1492 1276
exon 314 189
intron 81 72
description:
protein length (aa) 416 340
exons per gene 4.75 4
# of gene models 9931


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.