Status
The Umbelopsis ramanniana AG # genome was sequenced using the Illumina platform, assembled with AllPathsLG, and annotated with the JGI annotation pipeline and custom analyses.
Summary statistics for the Umbelopsis ramanniana AG # v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 23.08 |
| Sequencing read coverage depth | 112 |
| # of contigs | 239 |
| # of scaffolds | 198 |
| # of scaffolds >= 2Kbp | 159 |
| Scaffold N50 | 26 |
| Scaffold L50 (Mbp) | 0.29 |
| # of gaps | 41 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.88, 0.78, 0.75 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | CombestEstClusters | 46981 | 46786 | 99.6% |
| Other | RNAseq_contigs | 19675 | 17881 | 90.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1789 | 1532 |
| transcript | 1492 | 1276 |
| exon | 314 | 189 |
| intron | 81 | 72 |
| description: | ||
| protein length (aa) | 416 | 340 |
| exons per gene | 4.75 | 4 |
| # of gene models | 9931 |
Collaborators
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
